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Bibliography generated from CV source on 2026-06-03.

2025Foundations and Trends in Machine Learning

Artificial Intelligence for Science in Quantum, Atomistic, and Continuum Systems

Zhang, Xuan, Wang, Limei, Helwig, Jacob, Luo, Youzhi, Fu, Cong, Xie, Yaochen, Liu, Meng, Lin, Yuchao, Xu, Zhao, Yan, Keqiang, Adams, Keir, Weiler, Maurice, Li, Xiner, Fu, Tianfan, et al., Ji, Heng, Sun, Jimeng, Barzilay, Regina, Jaakkola, Tommi S., Coley, Connor W., Qian, Xiaoning, Qian, Xiaofeng, Smidt, Tess E., Ji, Shuiwang

Foundations and Trends in Machine Learning, 2025, 18(4): 385–912

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2025KDD

MEDS: Building Models and Tools in a Reproducible Health AI Ecosystem

McDermott, Matthew B. A., Xu, Justin, Bergamaschi, Teya S., Jeong, Hyewon, Lee, Simon A., Oufattole, Nassim, Rockenschaub, Patrick, Stankeviciute, Kamile, Steinberg, Ethan, Sun, Jimeng, Van De Water, Robin, Wornow, Michael, Wu, John, Wu, Zhenbang

Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), 2025: 6243–6244

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2025EMNLP

Process-Supervised Reward Models for Verifying Clinical Note Generation: A Scalable Approach Guided by Domain Expertise

Wang, Hanyin, Gao, Chufan, Xu, Qiping, Liu, Bolun, Hussein, Guleid, Korsapati, Hariprasad Reddy, El Labban, Mohamad, Iheasirim, Kingsley, Hassan, Mohamed, Anil, Gokhan, Bartlett, Brian, Sun, Jimeng

Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing (EMNLP), 2025: 19127–19147

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2025BIBM

RHealth: A R Toolkit for Deep Learning in Healthcare

Song, Ji, Ren, Zhixia, Wu, Zhenbang, Wu, John, Yang, Chaoqi, Zhu, Yinghao, Tang, Wen, Sun, Jimeng, Harrison, Ewen M., Ma, Liantao, Gao, Junyi

IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2025: 7379–7384

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2023KDD’

MedLink: De-Identified Patient Health Record Linkage

Wu, Zhenbang, Cao Xiao, and Jimeng Sun. 2023

In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2672–82. KDD ’23. New York, NY, USA: Association for Computing Machinery

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2023KDD’

PyHealth: A Deep Learning Toolkit for Healthcare Applications

Yang, Chaoqi, Zhenbang Wu, Patrick Jiang, Zhen Lin, Junyi Gao, Benjamin P. Danek, and Jimeng Sun. 2023

In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 5788–89. KDD ’23. New York, NY, USA: Association for Computing Machinery

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2023KDD’

TWIN: Personalized Clinical Trial Digital Twin Generation

Das, Trisha, Zifeng Wang, and Jimeng Sun. 2023

In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 402–13. KDD ’23. New York, NY, USA: Association for Computing Machinery

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2018SC

2018 (Best Student Paper)

Li, Jiajia, Jimeng Sun, and Richard Vuduc, HiCOO: Hierarchical Storage of Sparse Tensors, ACM/IEEE International Conference for High-Performance Computing, Networking, Storage, and Analysis (SC)

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2018JAMIA

Expert-Level Sleep Scoring with Deep Neural Networks

Biswal, Siddharth, Haoqi Sun, Balaji Goparaju, M. Brandon Westover, Jimeng Sun, and Matt T. Bianchi

Journal of the American Medical Informatics Association: JAMIA, November. https://doi.org/10.1093/jamia/ocy131. 2018

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2014JCF

Prevalence of Heart Failure Signs and Symptoms in a Large Primary Care Population Identified Through the Use of Text and Data Mining of the Electronic Health Record

Vijayakrishnan, Rajakrishnan, Steven R. Steinhubl, Kenney Ng, Jimeng Sun, Roy J. Byrd, Zahra Daar, Brent A. Williams, Christopher Defilippi, Shahram Ebadollahi, and Walter F. Stewart

Journal of Cardiac Failure, April 4, 2014. doi:10.1016/j.cardfail.2014.03.008. (impact factor 3.259)

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2014JCF

Prevalence of Heart Failure Signs and Symptoms in a Large Primary Care Population Identified Through the Use of Text and Data Mining of the Electronic Health Record

Vijayakrishnan, Rajakrishnan, Steven R. Steinhubl, Kenney Ng, Jimeng Sun, Roy J. Byrd, Zahra Daar, Brent A. Williams, Christopher Defilippi, Shahram Ebadollahi, and Walter F. Stewart

Journal of Cardiac Failure, April 4, 2014. doi:10.1016/j.cardfail.2014.03.008. (impact factor 3.259)

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2010EMBSC

Real-Time Prognosis of ICU Physiological Data Streams

Sow, Daby, Alain Biem, Jimeng Sun, Jianying Hu, and Shahram Ebadollahi

Conference Proceedings: Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2010 (2010): 6785–88. doi:10.1109/IEMBS.2010.5625983

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2008WCCI

Bayesian Tensor Analysis

Tao, Dacheng, Jimeng Sun, Jialie Shen, Xindong Wu, Xuelong Li, Stephen J. Maybank, and Christos Faloutsos

In Proceedings of the International Joint Conference on Neural Networks, IJCNN 2008, Part of the IEEE World Congress on Computational Intelligence, WCCI 2008, Hong Kong, China, June 1-6, 2008,

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2008IEEE TCSVT

Bayesian Tensor Approach for 3-D Face Modeling

Tao, Dacheng, Mingli Song, Xuelong Li, Jialie Shen, Jimeng Sun, Xindong Wu, Christos Faloutsos, and Stephen J. Maybank

IEEE Trans. Circuits Syst. Video Techn. 18, no. 10 (2008): 1397–1410

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2007ICONIP

Probabilistic Tensor Analysis with Akaike and Bayesian Information Criteria

Tao, Dacheng, Jimeng Sun, Xindong Wu, Xuelong Li, Jialie Shen, Stephen J. Maybank, and Christos Faloutsos

In Neural Information Processing, 14th International Conference, ICONIP 2007, Kitakyushu, Japan, November 13-16, 2007, 4984:791–801. Lecture Notes in Computer Science. Springer, 2007. doi:10.1007/978-3-540-69158-7_82

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2005ICDE

Online Latent Variable Detection in Sensor Networks

Jimeng Sun, Spiros Papadimitriou, and Christos Faloutsos

In Proceedings of the 21st International Conference on Data Engineering, ICDE 2005, 5-8 April 2005, Tokyo, Japan, 1126–27. IEEE Computer Society, 2005

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